IL_9Y79_053

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y79_053 not in the Motif Atlas

Geometric match to IL_8B0X_055

Geometric discrepancy: 0.185

The information below is about IL_8B0X_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9Y79|1|D|C|1259
9Y79|1|D|G|1260
9Y79|1|D|A|1261
9Y79|1|D|C|1262
9Y79|1|D|C|1263
*
9Y79|1|D|G|1272
9Y79|1|D|C|1273
9Y79|1|D|A|1274
9Y79|1|D|A|1275
9Y79|1|D|G|1276

Current chains

Chain D

16S rRNA

Nearby chains

Chain NG

Transcription termination/antitermination protein NusG

Chain S

Small ribosomal subunit protein uS14

Chain W

Small ribosomal subunit protein uS19