IL_9Y79_067

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y79_067 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0979

The information below is about IL_8B0X_071

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9Y79|1|a|C|239
9Y79|1|a|C|240
9Y79|1|a|A|241
9Y79|1|a|G|242
9Y79|1|a|U|243
9Y79|1|a|A|244
9Y79|1|a|G|245
*
9Y79|1|a|C|253
9Y79|1|a|G|254
9Y79|1|a|A|255
9Y79|1|a|A|256
9Y79|1|a|C|257
9Y79|1|a|G|258

Current chains

Chain a

23S rRNA

Nearby chains

Chain o

50S ribosomal protein L35

Chain u

Large ribosomal subunit protein uL15