IL_9Y79_069

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y79_069 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.2443

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9Y79|1|a|C|274
9Y79|1|a|C|275
9Y79|1|a|U|276
9Y79|1|a|G|277
9Y79|1|a|A|278
9Y79|1|a|A|279
9Y79|1|a|U|280
9Y79|1|a|C|281
*
9Y79|1|a|G|359
9Y79|1|a|U|360
9Y79|1|a|G|361
9Y79|1|a|A|362
9Y79|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains