IL_9Y79_092

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

9Y79|1|a|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y79_092 not in the Motif Atlas

Homologous match to IL_7A0S_032

Geometric discrepancy: 0.1654

The information below is about IL_7A0S_032

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9Y79|1|a|C|994
9Y79|1|a|C|995
9Y79|1|a|A|996
*
9Y79|1|a|U|1159
9Y79|1|a|G|1160

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

Ribosomal protein L21

Chain f

50S ribosomal protein L30

Chain s

Large ribosomal subunit protein uL13

Chain z

50S ribosomal protein L20