IL_9Y79_104

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

9Y79|1|a|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y79_104 not in the Motif Atlas

Geometric match to IL_9DFE_045

Geometric discrepancy: 0.3111

The information below is about IL_9DFE_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.5

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9Y79|1|a|G|1202
9Y79|1|a|U|1203
9Y79|1|a|A|1204
9Y79|1|a|A|1205
9Y79|1|a|G|1206
*
9Y79|1|a|U|1240
9Y79|1|a|A|1241
9Y79|1|a|U|1242
9Y79|1|a|C|1243

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

Large ribosomal subunit protein uL4

Chain u

Large ribosomal subunit protein uL15