IL_9Y79_108

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

9Y79|1|a|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y79_108 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.2519

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9Y79|1|a|C|1319
9Y79|1|a|C|1320
9Y79|1|a|A|1321
9Y79|1|a|A|1322
9Y79|1|a|C|1323
*
9Y79|1|a|G|1331
9Y79|1|a|G|1332
9Y79|1|a|G|1333

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22