IL_9YDB_016
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9YDB|1|A|A|519, 9YDB|1|A|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|G|517
9YDB|1|A|G|518
9YDB|1|A|A|519
9YDB|1|A|U|520
9YDB|1|A|A|521
9YDB|1|A|A|522
9YDB|1|A|A|523
9YDB|1|A|U|524
9YDB|1|A|C|525
*
9YDB|1|A|G|567
9YDB|1|A|G|568
9YDB|1|A|A|569
9YDB|1|A|A|570
9YDB|1|A|U|571
9YDB|1|A|A|572
9YDB|1|A|C|573
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LI
- 60S ribosomal protein L7-A
- Chain LO
- 60S ribosomal protein L14-A
- Chain LU
- 60S ribosomal protein L20-A
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