IL_9YDB_047
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 9YDB|1|A|U|1191, 9YDB|1|A|C|1192, 9YDB|1|A|C|1316, 9YDB|1|A|A|1318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|C|1187
9YDB|1|A|U|1188
9YDB|1|A|C|1189
9YDB|1|A|A|1190
9YDB|1|A|U|1191
9YDB|1|A|C|1192
9YDB|1|A|A|1193
9YDB|1|A|G|1194
*
9YDB|1|A|C|1314
9YDB|1|A|U|1315
9YDB|1|A|C|1316
9YDB|1|A|A|1317
9YDB|1|A|A|1318
9YDB|1|A|G|1319
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LK
- 60S ribosomal protein L9-A
- Chain LO
- 60S ribosomal protein L14-A
- Chain LQ
- 60S ribosomal protein L16-A
- Chain LU
- 60S ribosomal protein L20-A
- Chain Lo
- Ubiquitin-60S ribosomal protein L40
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