IL_9YDB_050

3D structure

PDB id

9YDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9YDB|1|A|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDB|1|A|U|1218
9YDB|1|A|C|1219
9YDB|1|A|U|1220
9YDB|1|A|A|1221
9YDB|1|A|G|1222
9YDB|1|A|A|1223
9YDB|1|A|C|1224
9YDB|1|A|A|1225
9YDB|1|A|G|1226
*
9YDB|1|A|C|1283
9YDB|1|A|C|1284
9YDB|1|A|G|1285
9YDB|1|A|A|1286
9YDB|1|A|A|1287

Current chains

Chain A

25S RNA

Nearby chains

Chain LU

60S ribosomal protein L20-A

Chain Lo

Ubiquitin-60S ribosomal protein L40