IL_9YDB_066

3D structure

PDB id

9YDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDB|1|A|U|1702
9YDB|1|A|U|1703
9YDB|1|A|A|1704
9YDB|1|A|U|1705
9YDB|1|A|C|1706
9YDB|1|A|A|1707
*
9YDB|1|A|U|1737
9YDB|1|A|C|1738
9YDB|1|A|U|1739
9YDB|1|A|U|1740
9YDB|1|A|A|1741
9YDB|1|A|U|1742
9YDB|1|A|G|1743

Current chains

Chain A

25S RNA

Nearby chains

Chain Li

60S ribosomal protein L34-A

Chain Lr

60S ribosomal protein L43-A