IL_9YDB_067
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 9YDB|1|A|U|1716, 9YDB|1|A|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|C|1711
9YDB|1|A|G|1712
9YDB|1|A|G|1713
9YDB|1|A|A|1714
9YDB|1|A|A|1715
9YDB|1|A|U|1716
9YDB|1|A|U|1717
*
9YDB|1|A|G|1727
9YDB|1|A|G|1728
9YDB|1|A|A|1729
9YDB|1|A|G|1730
9YDB|1|A|A|1731
9YDB|1|A|U|1732
9YDB|1|A|G|1733
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LT
- 60S ribosomal protein L19-A
- Chain Lb
- 60S ribosomal protein L27-A
- Chain Le
- 60S ribosomal protein L30
- Chain Li
- 60S ribosomal protein L34-A
- Chain Lr
- 60S ribosomal protein L43-A
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