IL_9YDB_083

3D structure

PDB id

9YDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9YDB|1|A|A|2281, 9YDB|1|A|C|2287, 9YDB|1|A|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDB|1|A|C|2277
9YDB|1|A|C|2278
9YDB|1|A|A|2279
9YDB|1|A|A|2280
9YDB|1|A|A|2281
9YDB|1|A|U|2282
9YDB|1|A|G|2283
9YDB|1|A|C|2284
9YDB|1|A|C|2285
9YDB|1|A|U|2286
9YDB|1|A|C|2287
9YDB|1|A|G|2288
*
9YDB|1|A|C|2304
9YDB|1|A|G|2305
9YDB|1|A|C|2306
9YDB|1|A|G|2307

Current chains

Chain A

25S RNA

Nearby chains

Chain V

60S ribosomal export protein NMD3

Chain W

Large subunit GTPase 1