IL_9YDB_097

3D structure

PDB id

9YDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

9YDB|1|A|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDB|1|A|G|2828
9YDB|1|A|U|2829
9YDB|1|A|G|2830
*
9YDB|1|A|U|2858
9YDB|1|A|U|2859
9YDB|1|A|U|2860
9YDB|1|A|U|2861
9YDB|1|A|U|2862

Current chains

Chain A

25S RNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LL

Large ribosomal subunit protein uL16

Chain V

60S ribosomal export protein NMD3