IL_9YDB_130
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- GAAAGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|B|G|21
9YDB|1|B|A|22
9YDB|1|B|A|23
9YDB|1|B|A|24
9YDB|1|B|G|25
9YDB|1|B|C|26
9YDB|1|B|A|27
*
9YDB|1|B|U|53
9YDB|1|B|U|54
9YDB|1|B|A|55
9YDB|1|B|A|56
9YDB|1|B|G|57
9YDB|1|B|C|58
Current chains
- Chain B
- 5S RNA
Nearby chains
- Chain LG
- 60S ribosomal protein L5
- Chain LM
- Large ribosomal subunit protein uL5B
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