IL_9YDB_134
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 9YDB|1|B|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|B|A|72
9YDB|1|B|C|73
9YDB|1|B|C|74
9YDB|1|B|G|75
9YDB|1|B|A|76
9YDB|1|B|G|77
9YDB|1|B|U|78
9YDB|1|B|A|79
9YDB|1|B|G|80
*
9YDB|1|B|C|100
9YDB|1|B|G|101
9YDB|1|B|A|102
9YDB|1|B|A|103
9YDB|1|B|A|104
9YDB|1|B|C|105
9YDB|1|B|U|106
Current chains
- Chain B
- 5S RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- 60S ribosomal protein L7-A
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LU
- 60S ribosomal protein L20-A
- Chain LV
- 60S ribosomal protein L21-A
Coloring options: