IL_9YDD_004
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 9YDD|1|A|A|49
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_004 not in the Motif Atlas
- Homologous match to IL_9SUM_004
- Geometric discrepancy: 0.0475
- The information below is about IL_9SUM_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93502.4
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9YDD|1|A|C|31
9YDD|1|A|U|32
9YDD|1|A|G|33
9YDD|1|A|A|34
9YDD|1|A|A|35
9YDD|1|A|C|36
9YDD|1|A|U|37
9YDD|1|A|U|38
*
9YDD|1|A|A|45
9YDD|1|A|U|46
9YDD|1|A|C|47
9YDD|1|A|A|48
9YDD|1|A|A|49
9YDD|1|A|U|50
9YDD|1|A|A|51
9YDD|1|A|A|52
9YDD|1|A|G|53
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Lq
- 60S ribosomal protein L42-A
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