IL_9YDD_005
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_005 not in the Motif Atlas
- Homologous match to IL_9PN5_005
- Geometric discrepancy: 0.0551
- The information below is about IL_9PN5_005
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62879.2
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9YDD|1|A|C|82
9YDD|1|A|U|83
9YDD|1|A|U|84
9YDD|1|A|A|85
9YDD|1|A|G|86
9YDD|1|A|U|87
9YDD|1|A|A|88
9YDD|1|A|A|89
*
9YDD|1|A|U|97
9YDD|1|A|G|98
9YDD|1|A|A|99
9YDD|1|A|A|100
9YDD|1|A|G|101
9YDD|1|A|C|102
9YDD|1|A|G|103
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain LS
- 60S ribosomal protein L18-A
- Chain Lc
- 60S ribosomal protein L28
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