IL_9YDD_007
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUG*CCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_007 not in the Motif Atlas
- Homologous match to IL_9PN5_007
- Geometric discrepancy: 0.0751
- The information below is about IL_9PN5_007
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.7
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 240
Unit IDs
9YDD|1|A|C|125
9YDD|1|A|U|126
9YDD|1|A|G|127
*
9YDD|1|A|C|141
9YDD|1|A|C|142
9YDD|1|A|G|143
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LJ
- 60S ribosomal protein L8-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain LZ
- 60S ribosomal protein L25
- Chain Lj
- 60S ribosomal protein L35-A
Coloring options: