IL_9YDD_025
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9YDD|1|A|A|933, 9YDD|1|A|G|937
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_025 not in the Motif Atlas
- Homologous match to IL_9SUM_026
- Geometric discrepancy: 0.0522
- The information below is about IL_9SUM_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.4
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9YDD|1|A|G|805
9YDD|1|A|A|806
9YDD|1|A|A|807
9YDD|1|A|A|808
9YDD|1|A|G|809
*
9YDD|1|A|C|931
9YDD|1|A|U|932
9YDD|1|A|A|933
9YDD|1|A|G|934
9YDD|1|A|U|935
9YDD|1|A|A|936
9YDD|1|A|G|937
9YDD|1|A|C|938
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Ll
- 60S ribosomal protein L37-A
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