IL_9YDD_027
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_027 not in the Motif Atlas
- Homologous match to IL_9AXU_029
- Geometric discrepancy: 0.059
- The information below is about IL_9AXU_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.5
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 29
Unit IDs
9YDD|1|A|U|834
9YDD|1|A|G|835
9YDD|1|A|A|836
9YDD|1|A|A|837
9YDD|1|A|G|838
*
9YDD|1|A|U|855
9YDD|1|A|G|856
9YDD|1|A|G|857
9YDD|1|A|A|858
9YDD|1|A|G|859
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LT
- 60S ribosomal protein L19-A
- Chain Lr
- 60S ribosomal protein L43-A
Coloring options: