IL_9YDD_035
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_035 not in the Motif Atlas
- Homologous match to IL_9PN5_037
- Geometric discrepancy: 0.0537
- The information below is about IL_9PN5_037
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.4
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9YDD|1|A|G|991
9YDD|1|A|A|992
9YDD|1|A|G|993
9YDD|1|A|G|994
9YDD|1|A|U|995
9YDD|1|A|A|996
9YDD|1|A|A|997
*
9YDD|1|A|U|1052
9YDD|1|A|A|1053
9YDD|1|A|A|1054
9YDD|1|A|A|1055
9YDD|1|A|U|1056
9YDD|1|A|A|1057
9YDD|1|A|U|1058
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain LI
- 60S ribosomal protein L7-A
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LV
- 60S ribosomal protein L21-A
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