IL_9YDD_050
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 9YDD|1|A|A|1221
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_050 not in the Motif Atlas
- Homologous match to IL_8GLP_082
- Geometric discrepancy: 0.2284
- The information below is about IL_8GLP_082
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.4
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 5
Unit IDs
9YDD|1|A|U|1218
9YDD|1|A|C|1219
9YDD|1|A|U|1220
9YDD|1|A|A|1221
9YDD|1|A|G|1222
9YDD|1|A|A|1223
9YDD|1|A|C|1224
9YDD|1|A|A|1225
9YDD|1|A|G|1226
*
9YDD|1|A|C|1283
9YDD|1|A|C|1284
9YDD|1|A|G|1285
9YDD|1|A|A|1286
9YDD|1|A|A|1287
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LU
- 60S ribosomal protein L20-A
- Chain Lo
- Ubiquitin-60S ribosomal protein L40
Coloring options: