IL_9YDD_056

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

9YDD|1|A|G|1514

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_056 not in the Motif Atlas

Homologous match to IL_9SUM_056

Geometric discrepancy: 0.1575

The information below is about IL_9SUM_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63596.15

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

24

Unit IDs

9YDD|1|A|U|1501
9YDD|1|A|C|1502
9YDD|1|A|A|1503
9YDD|1|A|A|1504
9YDD|1|A|C|1505
*
9YDD|1|A|G|1513
9YDD|1|A|G|1514
9YDD|1|A|A|1515

Current chains

Chain A

25S RNA

Nearby chains

Chain LR

60S ribosomal protein L17-A

Chain LT

60S ribosomal protein L19-A

Chain Ln

60S ribosomal protein L39