IL_9YDD_059

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAUA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_059 not in the Motif Atlas

Homologous match to IL_9PN5_063

Geometric discrepancy: 0.1825

The information below is about IL_9PN5_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77718.1

Basepair signature

cWW-L-cSW-cWW

Number of instances in this motif group

11

Unit IDs

9YDD|1|A|G|1618
9YDD|1|A|A|1619
9YDD|1|A|U|1620
9YDD|1|A|A|1621
*
9YDD|1|A|U|1824
9YDD|1|A|G|1825
9YDD|1|A|C|1826

Current chains

Chain A

25S RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain Lm

60S ribosomal protein L38