IL_9YDD_068
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 9YDD|1|A|U|1716, 9YDD|1|A|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_068 not in the Motif Atlas
- Homologous match to IL_9PN5_071
- Geometric discrepancy: 0.0681
- The information below is about IL_9PN5_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93476.4
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
9YDD|1|A|C|1711
9YDD|1|A|G|1712
9YDD|1|A|G|1713
9YDD|1|A|A|1714
9YDD|1|A|A|1715
9YDD|1|A|U|1716
9YDD|1|A|U|1717
*
9YDD|1|A|G|1727
9YDD|1|A|G|1728
9YDD|1|A|A|1729
9YDD|1|A|G|1730
9YDD|1|A|A|1731
9YDD|1|A|U|1732
9YDD|1|A|G|1733
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LT
- 60S ribosomal protein L19-A
- Chain Lb
- 60S ribosomal protein L27-A
- Chain Le
- 60S ribosomal protein L30
- Chain Li
- 60S ribosomal protein L34-A
- Chain Lr
- 60S ribosomal protein L43-A
- Chain SY
- 40S ribosomal protein S13
Coloring options: