IL_9YDD_084
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 9YDD|1|A|A|2281, 9YDD|1|A|C|2287, 9YDD|1|A|C|2306
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_084 not in the Motif Atlas
- Homologous match to IL_9SUM_083
- Geometric discrepancy: 0.0743
- The information below is about IL_9SUM_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.4
- Basepair signature
- cWW-L-tHH-cHW-cWW-L-L-R-L
- Number of instances in this motif group
- 10
Unit IDs
9YDD|1|A|C|2277
9YDD|1|A|C|2278
9YDD|1|A|A|2279
9YDD|1|A|A|2280
9YDD|1|A|A|2281
9YDD|1|A|U|2282
9YDD|1|A|G|2283
9YDD|1|A|C|2284
9YDD|1|A|C|2285
9YDD|1|A|U|2286
9YDD|1|A|C|2287
9YDD|1|A|G|2288
*
9YDD|1|A|C|2304
9YDD|1|A|G|2305
9YDD|1|A|C|2306
9YDD|1|A|G|2307
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain E
- Small subunit ribosomal RNA; SSU rRNA
- Chain Lp
- 60S ribosomal protein L41-A
- Chain m
- Transfer RNA; tRNA
Coloring options: