IL_9YDD_107
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CAAU*AGAACG
- Length
- 10 nucleotides
- Bulged bases
- 9YDD|1|A|A|3142, 9YDD|1|A|C|3143
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_107 not in the Motif Atlas
- Homologous match to IL_9PN5_110
- Geometric discrepancy: 0.0652
- The information below is about IL_9PN5_110
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.5
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 50
Unit IDs
9YDD|1|A|C|3004
9YDD|1|A|A|3005
9YDD|1|A|A|3006
9YDD|1|A|U|3007
*
9YDD|1|A|A|3139
9YDD|1|A|G|3140
9YDD|1|A|A|3141
9YDD|1|A|A|3142
9YDD|1|A|C|3143
9YDD|1|A|G|3144
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LE
- 60S ribosomal protein L3
- Chain LQ
- 60S ribosomal protein L16-A
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