IL_9YDD_109
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_109 not in the Motif Atlas
- Homologous match to IL_9SUM_110
- Geometric discrepancy: 0.0874
- The information below is about IL_9SUM_110
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34443.2
- Basepair signature
- cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9YDD|1|A|C|3018
9YDD|1|A|U|3019
9YDD|1|A|U|3020
9YDD|1|A|A|3021
9YDD|1|A|G|3022
9YDD|1|A|U|3023
9YDD|1|A|A|3024
9YDD|1|A|C|3025
*
9YDD|1|A|G|3030
9YDD|1|A|G|3031
9YDD|1|A|A|3032
9YDD|1|A|A|3033
9YDD|1|A|C|3034
9YDD|1|A|A|3035
9YDD|1|A|G|3036
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LE
- 60S ribosomal protein L3
- Chain LK
- 60S ribosomal protein L9-A
- Chain LX
- 60S ribosomal protein L23-A
- Chain Lo
- Ubiquitin-60S ribosomal protein L40
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