IL_9YDD_113
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AUUAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- 9YDD|1|A|A|3130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_113 not in the Motif Atlas
- Homologous match to IL_9PN5_116
- Geometric discrepancy: 0.0663
- The information below is about IL_9PN5_116
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.4
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
9YDD|1|A|A|3103
9YDD|1|A|U|3104
9YDD|1|A|U|3105
9YDD|1|A|A|3106
9YDD|1|A|U|3107
*
9YDD|1|A|A|3127
9YDD|1|A|G|3128
9YDD|1|A|A|3129
9YDD|1|A|A|3130
9YDD|1|A|U|3131
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LK
- 60S ribosomal protein L9-A
- Chain LQ
- 60S ribosomal protein L16-A
- Chain Lo
- Ubiquitin-60S ribosomal protein L40
Coloring options: