IL_9YDD_134
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 9YDD|1|B|C|73
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_134 not in the Motif Atlas
- Homologous match to IL_9PN5_138
- Geometric discrepancy: 0.0854
- The information below is about IL_9PN5_138
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.6
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
9YDD|1|B|A|72
9YDD|1|B|C|73
9YDD|1|B|C|74
9YDD|1|B|G|75
9YDD|1|B|A|76
9YDD|1|B|G|77
9YDD|1|B|U|78
9YDD|1|B|A|79
9YDD|1|B|G|80
*
9YDD|1|B|C|100
9YDD|1|B|G|101
9YDD|1|B|A|102
9YDD|1|B|A|103
9YDD|1|B|A|104
9YDD|1|B|C|105
9YDD|1|B|U|106
Current chains
- Chain B
- 5S RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- 60S ribosomal protein L7-A
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LU
- 60S ribosomal protein L20-A
- Chain LV
- 60S ribosomal protein L21-A
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