IL_9YDD_135
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AGUG*CAU
- Length
- 7 nucleotides
- Bulged bases
- 9YDD|1|B|U|86
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_135 not in the Motif Atlas
- Homologous match to IL_8QYX_171
- Geometric discrepancy: 0.074
- The information below is about IL_8QYX_171
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.7
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 240
Unit IDs
9YDD|1|B|A|84
9YDD|1|B|G|85
9YDD|1|B|U|86
9YDD|1|B|G|87
*
9YDD|1|B|C|94
9YDD|1|B|A|95
9YDD|1|B|U|96
Current chains
- Chain B
- 5S RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- 60S ribosomal protein L7-A
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LU
- 60S ribosomal protein L20-A
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