IL_9YDD_140
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UCAAA*UGACAA
- Length
- 11 nucleotides
- Bulged bases
- 9YDD|1|E|A|468
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_140 not in the Motif Atlas
- Homologous match to IL_9PN5_144
- Geometric discrepancy: 0.0739
- The information below is about IL_9PN5_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_35092.2
- Basepair signature
- cWW-cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9YDD|1|E|U|37
9YDD|1|E|C|38
9YDD|1|E|A|39
9YDD|1|E|A|40
9YDD|1|E|A|41
*
9YDD|1|E|U|466
9YDD|1|E|G|467
9YDD|1|E|A|468
9YDD|1|E|C|469
9YDD|1|E|A|470
9YDD|1|E|A|471
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SS
- 40S ribosomal protein S4-A
- Chain SW
- 40S ribosomal protein S9-A
- Chain Sd
- 40S ribosomal protein S24-A
Coloring options: