IL_9YDD_143
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UCUAAG*CUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_143 not in the Motif Atlas
- Homologous match to IL_9PN5_147
- Geometric discrepancy: 0.1181
- The information below is about IL_9PN5_147
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61299.9
- Basepair signature
- cWW-cWH-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
9YDD|1|E|U|58
9YDD|1|E|C|59
9YDD|1|E|U|60
9YDD|1|E|A|61
9YDD|1|E|A|62
9YDD|1|E|G|63
*
9YDD|1|E|C|87
9YDD|1|E|U|88
9YDD|1|E|G|89
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SS
- 40S ribosomal protein S4-A
- Chain ST
- 40S ribosomal protein S6-A
- Chain Sd
- 40S ribosomal protein S24-A
Coloring options: