IL_9YDD_145
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GUUA*UUUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_145 not in the Motif Atlas
- Homologous match to IL_9PN5_149
- Geometric discrepancy: 0.0636
- The information below is about IL_9PN5_149
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 43
Unit IDs
9YDD|1|E|G|109
9YDD|1|E|U|110
9YDD|1|E|U|111
9YDD|1|E|A|112
*
9YDD|1|E|U|302
9YDD|1|E|U|303
9YDD|1|E|U|304
9YDD|1|E|C|305
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SS
- 40S ribosomal protein S4-A
- Chain SV
- 40S ribosomal protein S8-A
- Chain SX
- 40S ribosomal protein S11-A
Coloring options: