IL_9YDD_148

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9YDD|1|E|U|170

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_148 not in the Motif Atlas

Homologous match to IL_9H3G_165

Geometric discrepancy: 0.1176

The information below is about IL_9H3G_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

9YDD|1|E|G|143
9YDD|1|E|U|144
9YDD|1|E|A|145
9YDD|1|E|U|146
9YDD|1|E|A|147
9YDD|1|E|A|148
9YDD|1|E|C|149
*
9YDD|1|E|G|165
9YDD|1|E|C|166
9YDD|1|E|U|167
9YDD|1|E|A|168
9YDD|1|E|A|169
9YDD|1|E|U|170
9YDD|1|E|A|171
9YDD|1|E|C|172

Current chains

Chain E

18S rRNA

Nearby chains

Chain ST

40S ribosomal protein S6-A

Chain Sd

40S ribosomal protein S24-A