IL_9YDD_155
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 9YDD|1|E|U|313, 9YDD|1|E|C|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_155 not in the Motif Atlas
- Homologous match to IL_9PN5_159
- Geometric discrepancy: 0.0646
- The information below is about IL_9PN5_159
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.7
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9YDD|1|E|U|311
9YDD|1|E|A|312
9YDD|1|E|U|313
9YDD|1|E|C|314
9YDD|1|E|A|315
9YDD|1|E|A|316
*
9YDD|1|E|U|348
9YDD|1|E|U|349
9YDD|1|E|U|350
9YDD|1|E|C|351
9YDD|1|E|A|352
9YDD|1|E|A|353
9YDD|1|E|C|354
9YDD|1|E|G|355
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SV
- 40S ribosomal protein S8-A
- Chain SX
- 40S ribosomal protein S11-A
- Chain Sc
- 40S ribosomal protein S23-A
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