IL_9YDD_164

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_164 not in the Motif Atlas

Homologous match to IL_9H3G_183

Geometric discrepancy: 0.1768

The information below is about IL_9H3G_183

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_26092.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9YDD|1|E|U|517
9YDD|1|E|A|518
*
9YDD|1|E|U|533
9YDD|1|E|A|534
9YDD|1|E|A|535

Current chains

Chain E

18S rRNA

Nearby chains

Chain SW

40S ribosomal protein S9-A

Chain Sd

40S ribosomal protein S24-A