IL_9YDD_168
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9YDD|1|E|A|579, 9YDD|1|E|U|581, 9YDD|1|E|U|582
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_168 not in the Motif Atlas
- Homologous match to IL_9H3G_187
- Geometric discrepancy: 0.1028
- The information below is about IL_9H3G_187
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9YDD|1|E|G|562
9YDD|1|E|U|563
9YDD|1|E|G|564
9YDD|1|E|C|565
9YDD|1|E|C|566
9YDD|1|E|A|567
9YDD|1|E|G|568
*
9YDD|1|E|C|575
9YDD|1|E|G|576
9YDD|1|E|G|577
9YDD|1|E|U|578
9YDD|1|E|A|579
9YDD|1|E|A|580
9YDD|1|E|U|581
9YDD|1|E|U|582
9YDD|1|E|C|583
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain D
- messenger RNA
- Chain SA
- 40S ribosomal protein S3
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Sg
- 40S ribosomal protein S30-A
- Chain m
- Transfer RNA; tRNA
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