IL_9YDD_178

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

9YDD|1|E|U|959

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_178 not in the Motif Atlas

Homologous match to IL_9PN5_183

Geometric discrepancy: 0.1127

The information below is about IL_9PN5_183

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9YDD|1|E|G|868
9YDD|1|E|A|869
9YDD|1|E|C|870
*
9YDD|1|E|G|957
9YDD|1|E|U|958
9YDD|1|E|U|959
9YDD|1|E|U|960

Current chains

Chain E

18S rRNA

Nearby chains

Chain SY

40S ribosomal protein S13

Chain Sf

40S ribosomal protein S27-A