IL_9YDD_181

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_181 not in the Motif Atlas

Homologous match to IL_9PN5_186

Geometric discrepancy: 0.0711

The information below is about IL_9PN5_186

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9YDD|1|E|G|885
9YDD|1|E|U|886
9YDD|1|E|A|887
9YDD|1|E|U|888
*
9YDD|1|E|A|924
9YDD|1|E|G|925
9YDD|1|E|A|926
9YDD|1|E|C|927

Current chains

Chain E

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein eS1A

Chain SZ

40S ribosomal protein S14-B

Chain Se

Small ribosomal subunit protein eS26B