IL_9YDD_182
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 9YDD|1|E|G|913
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_182 not in the Motif Atlas
- Homologous match to IL_9PN5_187
- Geometric discrepancy: 0.125
- The information below is about IL_9PN5_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDD|1|E|U|893
9YDD|1|E|U|894
9YDD|1|E|G|895
9YDD|1|E|U|896
9YDD|1|E|C|897
9YDD|1|E|A|898
9YDD|1|E|G|899
*
9YDD|1|E|C|910
9YDD|1|E|U|911
9YDD|1|E|U|912
9YDD|1|E|G|913
9YDD|1|E|G|914
9YDD|1|E|A|915
9YDD|1|E|U|916
9YDD|1|E|U|917
9YDD|1|E|U|918
9YDD|1|E|A|919
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain SZ
- 40S ribosomal protein S14-B
Coloring options: