IL_9YDD_202
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 9YDD|1|E|U|1432, 9YDD|1|E|G|1435
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_202 not in the Motif Atlas
- Homologous match to IL_9H3G_221
- Geometric discrepancy: 0.1016
- The information below is about IL_9H3G_221
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09439.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
9YDD|1|E|U|1276
9YDD|1|E|G|1277
9YDD|1|E|G|1278
*
9YDD|1|E|U|1430
9YDD|1|E|C|1431
9YDD|1|E|U|1432
9YDD|1|E|G|1433
9YDD|1|E|U|1434
9YDD|1|E|G|1435
9YDD|1|E|A|1436
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SA
- 40S ribosomal protein S3
- Chain SC
- 40S ribosomal protein S10-A
- Chain SJ
- 40S ribosomal protein S20
- Chain SM
- 40S ribosomal protein S29-A
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