IL_9YDD_208

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

9YDD|1|E|U|1370, 9YDD|1|E|A|1371

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_208 not in the Motif Atlas

Homologous match to IL_9H3G_227

Geometric discrepancy: 0.5873

The information below is about IL_9H3G_227

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9YDD|1|E|G|1352
9YDD|1|E|U|1353
9YDD|1|E|G|1354
*
9YDD|1|E|U|1369
9YDD|1|E|U|1370
9YDD|1|E|A|1371
9YDD|1|E|U|1372
9YDD|1|E|C|1373

Current chains

Chain E

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S16-A

Chain SI

40S ribosomal protein S19-A