IL_9YDD_213

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9YDD|1|E|C|1637, 9YDD|1|E|A|1766

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_213 not in the Motif Atlas

Homologous match to IL_9SUM_216

Geometric discrepancy: 0.0977

The information below is about IL_9SUM_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

7

Unit IDs

9YDD|1|E|C|1636
9YDD|1|E|C|1637
9YDD|1|E|G|1638
*
9YDD|1|E|C|1764
9YDD|1|E|A|1765
9YDD|1|E|A|1766
9YDD|1|E|G|1767

Current chains

Chain E

18S rRNA

Nearby chains

Chain D

messenger RNA

Chain Se

Small ribosomal subunit protein eS26B

Chain n

Transfer RNA; tRNA