IL_9YDD_214
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_214 not in the Motif Atlas
- Homologous match to IL_9SUM_217
- Geometric discrepancy: 0.0819
- The information below is about IL_9SUM_217
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.5
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9YDD|1|E|G|1638
9YDD|1|E|C|1639
9YDD|1|E|C|1640
9YDD|1|E|C|1641
*
9YDD|1|E|G|1760
9YDD|1|E|U|1761
9YDD|1|E|A|1762
9YDD|1|E|A|1763
9YDD|1|E|C|1764
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- messenger RNA
- Chain Lp
- 60S ribosomal protein L41-A
- Chain n
- Transfer RNA; tRNA
Coloring options: