IL_9YDE_039

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDE_039 not in the Motif Atlas

Homologous match to IL_9PN5_041

Geometric discrepancy: 0.056

The information below is about IL_9PN5_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9YDE|1|A|A|1009
9YDE|1|A|G|1010
9YDE|1|A|A|1011
*
9YDE|1|A|U|1039
9YDE|1|A|A|1040
9YDE|1|A|U|1041

Current chains

Chain A

25S RNA

Nearby chains

Chain LG

60S ribosomal protein L5

Chain LL

Large ribosomal subunit protein uL16