IL_9YDE_188
3D structure
- PDB id
- 9YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GGAU*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDE_188 not in the Motif Atlas
- Homologous match to IL_9PN5_192
- Geometric discrepancy: 0.0772
- The information below is about IL_9PN5_192
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 42
Unit IDs
9YDE|1|E|G|1041
9YDE|1|E|G|1042
9YDE|1|E|A|1043
9YDE|1|E|U|1044
*
9YDE|1|E|G|1074
9YDE|1|E|C|1075
9YDE|1|E|A|1076
9YDE|1|E|C|1077
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SP
- 40S ribosomal protein S0-A
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain SY
- 40S ribosomal protein S13
- Chain Se
- Small ribosomal subunit protein eS26B
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