IL_9YPG_123

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPG_123 not in the Motif Atlas

Geometric match to IL_7KGA_006

Geometric discrepancy: 0.2328

The information below is about IL_7KGA_006

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_57267.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

9YPG|1|5|C|3948
9YPG|1|5|A|3949
*
9YPG|1|5|U|4063
9YPG|1|5|C|4064
9YPG|1|5|G|4065

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain i

60S ribosomal protein L36