IL_9YPG_164

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUCG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPG_164 not in the Motif Atlas

Homologous match to IL_9H3G_140

Geometric discrepancy: 0.1474

The information below is about IL_9H3G_140

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9YPG|1|5|U|4972
9YPG|1|5|U|4973
9YPG|1|5|C|4974
9YPG|1|5|G|4975
*
9YPG|1|5|C|4983
9YPG|1|5|C|4984
9YPG|1|5|U|4985
9YPG|1|5|G|4986

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain P

Large ribosomal subunit protein uL22

Chain d

eL31