IL_9YPG_205

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

9YPG|1|9|C|548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPG_205 not in the Motif Atlas

Geometric match to IL_9H3G_227

Geometric discrepancy: 0.2986

The information below is about IL_9H3G_227

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9YPG|1|9|G|535
9YPG|1|9|A|536
9YPG|1|9|C|537
*
9YPG|1|9|G|546
9YPG|1|9|G|547
9YPG|1|9|C|548
9YPG|1|9|C|549

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain ee

40S ribosomal protein S30